Linux on System z, Linux on zSeries, Linux/390, zLinux, z/Linux, z/VM & UNIX Shell services. IBM OS/360, OS/370, MVS, OS/390, TPF, VM/CMS, VM/ESA, VSE/ESA, z/VSE, z/OS.
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Linux on system z is pretty much standard Linux and programs that run under Linux will typically run under Linux on system z. Red Hat and SUSE have Linux on system z support, but other distributions are also available. Java applications should run the same.